BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005A05LP1|AL425312
(340 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 456 e-128
>3x_Contig1619
Length = 7770
Score = 456 bits (222), Expect = e-128
Identities = 281/314 (89%)
Strand = Plus / Plus
Query: 27 ctatcgtatyctcagccttaattcaaggagtatcaagamacccatcattaaaasatacat 86
||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 975 ctatcgtattctcagccttaattcaaggagtatcaagaaacccatcattaaaagatacat 1034
Query: 87 tattcccattcgcmattttaggatnnagagtgngtnctatttttcttatttatcccataa 146
||||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||
Sbjct: 1035 tattcccattcgcaattttaggataaagagtgagtcctatttttcttatttatcccataa 1094
Query: 147 tcttattaagattatgggatataattmgmatathammytgggtgaattgcmagamactcc 206
|||||||||||||||||||||||||| | |||| | |||||||||||| ||| |||||
Sbjct: 1095 tcttattaagattatgggatataattagaatataaaattgggtgaattgcaagaaactcc 1154
Query: 207 tagtatttmataattatcttacmtatggacaatttgcagcgaagtttatmacaacctata 266
|||||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 1155 tagtatttaataattatattaaatatggacaatttgcagcgaagtttataacaacctata 1214
Query: 267 ttatmttctyctctcctaccccccccccgctcgtccaaccctwcggttagacgatgccgc 326
|||| || | | | || |||| | | |||||||||||||| |||||||||||||||||
Sbjct: 1215 ttatattattatataataaccccacgcggctcgtccaaccctacggttagacgatgccgc 1274
Query: 327 gtggggagttataa 340
||||||||||||||
Sbjct: 1275 gtggggagttataa 1288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.718 1.35
Gapped
Lambda K H
1.42 0.718 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 954
Number of Sequences: 1807
Number of extensions: 954
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 340
length of database: 10,358,551
effective HSP length: 15
effective length of query: 325
effective length of database: 10,331,446
effective search space: 3357719950
effective search space used: 3357719950
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.8 bits)
S1: 11 (23.1 bits)
S2: 48 (99.1 bits)